Hands-on Scientific Computing
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The material

  • A: Basics
  • B: Related science skills
    • B21 Jupyter Notebooks
  • C: Linux and shell
  • D: Clusters and High Performance Computing
  • E: Scientific coding
  • F: Advanced high performance computing

About

  • About
  • Study credits (Aalto)
  • Study credits (FITech)
  • For teachers

Other virtual courses

  • CodeRefinery
  • HPC Kickstart

See also

  • Similar resources
Hands-on Scientific Computing
  • B: Related science skills
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B: Related science skills

  • B21 Jupyter Notebooks

About

Questions

Video Intro

Reading

Aalto

B20 Data Management

Data needs to be organized and handled well, or else it quickly becomes unusable. There are good and bad ways to do this.

>How to use version control in data management? >What kind of ordering makes the best structure?

>What is not data management, in 5 minutes and >Data structuring

>The Turing Way data management chapter >Information for research at FSD

Research data management at Aalto, at scicomp.aalto.fi

B21 Jupyter Notebooks

Notebooks are an efficient way to make self-documenting code and scripts and make data science a bit easier.

>For what kind of work Jupyter suits the best? >How is a Jupyter kernel launched?

>Data analysis with Jupyter video series.

>CodeRefinery Jupyter course

JupyterHub for students/misc work, JupyterHub for HPC

B30 Making figures

How to make publication-quality figures for your work.

>What kinds of tools exist for making figures and plots? >What are some dos and don’ts for plots and figures?

>Inkscape tutorials covering Inkscape basics for making figures, flowcharts, etc. >A series of Matplotlib tutorials for plotting in Python. >ggplot2 tutorials in R.

>PLOS guidelines for better figures

B31 LaTeX for scientific publications

LaTeX is the standard method for making publications in the computational and physical sciences.

>How to build a LaTeX document?

>LaTeX tutorial series covering LaTeX formatting and constructing a report

>Introduction to LaTeX (online book) >Short summary of LaTex features

> Guide to LaTeX (FI)

B32 Scientific posters

Making a scientific poster is a common task, but not often taught. There are better tools than PowerPoint.

>What makes a clear and concise poster?

>The dos and don’ts of making a scientific poster

>Basics of creating a Research Poster

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